A lot depends on your location, the design/installation of the HRSG units and the resources at your disposal. The main thing is to prevent the condensation from forming in the first place.
Does your unit have a damper in the exhaust ducting or in the stack? One some of our units we close the inlet and outlet dampers, remove the manway from the ductwork between the gas turbine and the boiler, and stick a Herman Nelson in the manway. The Herman Nelson is a portable, gas fired heater/blower. It does not take much energy to keep the boiler section warm enough to prevent condensation. Enough air leaks by the outlet damper so there is always fresh air movement through the furnace but not so much that we can't control the tmeperature/humidity.
On some of our other units, we've piped in small high pressure feedwater supply and return connections. When the unit comes down for an extended period, we flood the superheaters and continuously circulate this small amount of feedwater through the boiler and superheater and returning to the deaerator. Again the intent is to keep the furnace above the dew point.
Sometimes, all that is necessary is to ensure the boiler is completely drained. It is more difficult to have external condensation on empty boiler tubes than on tubes filled with cooler water. This would depend on your supply of boiler feedwater and the run/standby times of the units.
There are more options but it depends on the boiler design the unit location. Keep the boiler warm and dry and you won't have any problems. Try to avoid spraying water into the flue gas.