kolvos,
Where is this countersink going to be located?
If something is sitting on top of the flat head screw, you need the screw to sit invariably below flush. If you are using the flat head screw because it looks cool, you want to set as close to flush as possible. This will affect your tolerances. I do not have any size tables with me at the moment. The size tables I am aware of show that flat head screws, especially small ones, have sloppy diameter tolerances. I have been told my machine shops that if I want stuff like this fabricated properly, I should give them the screws.
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JHG