To clarify things I offer the following, please correct me if I am wrong.
It seems that when you say current unbalance you really mean differential. I say this because it seems that you have swapped CT leads from one set of CT's to an other. I am assuming this was a troubleshooting procedure and, according to your post, the fault remained on B phase. If this is the case, it means that, most likely the problem is the relay or the wiring to the relay. If the problem was the generator or the CT the fault would have followed the swap.
The relay should be tested by a qualified technician. Have him apply equal currents at the correct phase angle and ramp them quickly, see what happens.
One word of caution, the generator failed a HIPOT and you are tripping on differential. In the event that you really do have a fault, continuously applying excitation can cause severe damage. Siemens should have made a recommendation on why the generator failed the HIPOT and what might be causing it and what the corrective action should be.