At the pressures involved, diesel fuel can no longer be considered compressible, nor can the steel fuel lines be considered inflexible.
On many normal applications (4 or 6 cylinder engine), the piston-pump delivery strokes are synchronized with the crank/camshaft so that a delivery stroke is occurring during the time that an injector would be expected to open (i.e. through each TDC). Obviously the delivery volume is not co-ordinated, but doing that allows (at least theoretically) less rail pressure fluctuation, because "in" and "out" are happening more-or-less together, even if not absolutely synchronized.
I suspect that you are in for a whole lot of trouble with this project, as others have been suggesting. Most modern diesel injection components are designed for automotive, and those are more-or-less 500cc and 30-ish horsepower per cylinder, or more. What's your objective?