Hi,
unfortunately, all the fatigue add-ons I know are not freeware. Even the CosmosWorks' module Corus refers to is not free. The same is for Ansys Workbench Fatigue feature. Moreover, all these work inside programs which are very expensive by nature...
However, provided that the free FE code you want to use is able to perform results' combinations (i.e. linear combinations of loadcases), you can do high-cycle fatigue assessment "by yourself", IMO without paying the price for any more software.
Regards