The tables I believe you are referring to are for prequalified fillet welds. The sizes listed are the minimum weld sizes based on metallurgical considerations, i.e., sufficient heat input to minimize the formation of undesirable microstructures. It is assumed the minimum preheat requirements are met as a condition of prequalification.
One qualifies the WPS for fillet welds when the conditions of prequalification are not met. In that case, the contractor must qualify a WPS for fillet welds. Generally, the welding parameters are established by welding the largest single pass fillet weld and a second sample is welded depositing the smallest multiple pass fillet weld. The is a practical limit to the sizes (both largest and smallest) based on the size of the filler metal used. Once the parameters required to deposit suitable welds are established, i.e., voltage, amperage, travel speed, wire feed speed, etc., the mechanical properties are verified by welding a butt joint utilizing a CJP groove weld. The groove welded assembly is then subjected to VT, volumetric NDE, reduced section tensile testing, and guided bend tests. The essential variables listed in D1.X are reqorded on the PQR and become the basis of the "qualified WPS."
Best regards - Al