Since youre using beam elements it couldn't be so difficult. I recommend to output the stresses to the dat file, extract them (editor, awk or whatever) and include them into your input file like described below. Try it first with a simple test model to be sure that it will work
Pam
Data lines for TYPE=STRESS if the GEOSTATIC, REBAR, SECTION POINTS, and USER parameters are omitted:
First line:
Element number or element set label.
Value of first (effective) stress component, axial force when used with the *BEAM GENERAL SECTION or *FRAME SECTION options, or direct membrane force per unit width in the local 1-direction when used with the *SHELL GENERAL SECTION option.
Value of second stress component.
Etc., up to six stress components.
Give the stress components as defined for this element type in Part V, “Elements,” of the ABAQUS Analysis User's Manual. Stress values given on data lines are applied uniformly over the element. In any element for which an *ORIENTATION option applies, the stresses must be given in the local system (“Orientations,” Section 2.2.5 of the ABAQUS Analysis User's Manual).
Repeat this data line as often as necessary to define initial stresses in various elements or element sets.