My guess is that the load will still get into the frames regardless of whether the drag members are there or not, and the drag members are excluded from the lateral system in the model to prevent the drag members from affecting the stiffness of the lateral system. I believe sometimes drag members need to be designated as lateral for the sake of getting the diaphragm to correctly load different shear lines. For example, if you know one shear line should see more load than it is in the model then adding a lateral drag strut may allow you to get more load into that shear line.
This is somewhat speculative, so hopefully some members more familiar with the software chime in.