The load path from the diaphragm edge nailing to the rim, from the rim to the sill, from the sill through the bolts must all have at least the same or more strength as the diaphragm edge nailing.
I don't usually worry about how additional flexibility due to this indirect load path to the chord effects the diaphragm deflection unless there are very flexible items in the load path. For example if instead of a rim joist you have shear wall, this may increase diaphragm deflection or at least the chord component of diaphragm deflection.