Windage is not winding resistance, it is the wind resistance to the rotor as it spins. You'd pretty much have to run the motor in a vacuum to sort out the windage and the mechanical friction; generally they are lumped in together.
You'll have to know all of the electrical losses in the motor, for which you will need a good motor model. Lots of electrical tests to determine the model. Once you have your model, so for any given current into the motor you can calculate all of the electrical losses. Then run the motor on a dynamometer. Electrical power into the motor less motor electrical losses, less less mechanical power out gives friction and windage. Up to you to sort it all out.