If you're tearing up aluminum, can you change your jig material to something a little more robust, like a stainless steel or something? Or even make the critical parts out of stainless and keep the base aluminum. Then have those parts removed for cleaning instead of doing the whole jig.
The one e-coat paint line I did in a previous life, the hanging fixtures were just plain old carbon steel that going through the dip tank would build up over time. They essentially had a whole second set of hangers, and would swap them out as they built up. I believe they used sand blasting or a furnace to remove any build-up.
James Spisich
Design Engineer, CSWP