Run1on,
First of all, if your system is not a primary/secondary system, I am not 100% convinced variable flow through a chiller is all that great. I know that some manufacturers say that it can work with their chillers, but some manufacturers still don't believe in it. The only place I have seen VFD's on pumps work is on a primary/secondary system (or as ASHRAE calls it now, a "decoupled system"

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My personal opinion is that water flow should be constant through the chillers for stable control. A chiller typically controls discharge water temperature, and the heat exchange rate in the evaporator is directly related to flow. Therefore, your system is trying to control too many variables. Control becomes unstable, and if your system is even semi-critical, unreliable.
With a decoupled system, your chiller circulating pumps are lower head pumps and therefore have smaller horsepower requirements. The main system pumps are then VFD. This reduces starting hp for the chiller pumps and gives you lower operating hp's on the delivery side. This way the chillers only have to control leaving water temperature with a constant flow.
Not sure what your system is or how it operates, but hopefully this gives you some insight as to some of your choices. Maybe a little more detail on the system could help to get more detailed answers.