There's one other big heat sink on many many centrifuges, and that sink is usually located outside of the centrifuge room: the breaking resistor on the VFD controller. If you have one of those, then the large majority of the electrical input power will be burnt off by the resistor and exhausted outside the room. In that event, the BTU output of the centrifuge will only be the running-load power input into the motor -- NOT the starting energy. You'd only need to account for frictional losses, not the kinetic energy. The frictional losses should be much much less than the kinetic energy.
If you just have an on-off switch though, and a mechanical brake, then all the above is true, every bit of power you send to your motor will be converted to heat in the room with a 100% efficacy.