Montana1,
I think what your contractor is doing should be perfectly acceptable. A couple of caveats though.
1)if any of the bolts are loaded in tension or in tension+shear, then make sure that the erection process (considering lifting points, any resulting cantilevers, etc will not result in any stress increases beyond what the bolts were designed for. Also that the erection procedures don't put tensile loads on any bolts that they cannot handle.
2) Not bolt related, but consider all member stresses resulting from the same erection conditions- make sure that no members are overstressed.
That said, from your description, it sounds like the contractor is assembling bents lying on the ground and lifting or tilting them to the upright position. I would not expect this to cause overstress in bolts or members. A competent erector should be able to accomplish this without mishap, based on his/his crews'/his foremen's experience and "feel".
I would expect more potential for problems with bent baseplates or anchor bolts tnan with the steel and high strength bolts themselves.
regards,
chichuck