Quite likely the unit pressure from the fill will be such that compression of the muskeg will control the overall situation as to total settlement taking place. Thus,the bearing pressure from a footing on the fill is more the capability of the fill than how this pressure affects the lower muskeg.
In short, settlement caused by the fill would be your main concern, rather than a "bearing capacity" of a footing on the fill.
In these n stances, I usually neglected any increase in vertical pressure in the "muskeg" resulting from a footing on the fill, since I routinely surcharged the site, over and above the loadings from the long term fill alone. The slight excess vertical pressure from the footing in the top of the muskeg had incidental effect on the overall situation.