The 2 in Hg (= 0.98 psi !!!) difference in the readings IS ABSOLUTELY NOT due to a 30 foot static head of steam.
For example, even at the relatively high exhaust pressure of 2.00 psia:
30 ft * 0.00588 lb/ft^3 ==> 0.0012 psid
Your exhaust pressure (and density) is probably less, and the elevation would therefore cause even less difference in the readings.
TD2K has a good question/suggestion that you should switch the instrumentation and compare those readings as a way to troubleshoot this oddity.
It is also possible that there is a difference in the "water legs" on the sensing lines leading to your instruments. (The water leg is the accumulation of condensate in pressure sensing connections on steam piping.) This must be properly accounted for when zeroing the instruments.
What is bothersome is that there was (apparently) a "sudden" change in the measurements. As VPL asked - What changed after the outage?
On a 160 MW turbine, you had better know to within 0.1 in HgA what is your exhaust pressure; the optimal performance of the turbine will be at (or near) the "design exhaust pressure".