owassokings-
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Not sure which design code your ducting falls under - low pressure ductwork may not fall directly within the scope of any code. If this is the case, then I have to ask how you are deriving your 800 to 1000°F design temperature for your bolting? Are those temperatures from a line list for the ductwork? Is it the fluid temperature? Or... since you seem to be in an operating plant, have you directly measured the bolt temperatures?
If I did not have a code mandating my design, I would choose B31.3 or VIII-1 simply because I'm familiar with them, and use them for guidance. Take a close look at B31.3 301.3.2(b)(4). Here you are allowed to set the design temperature of the bolts at no less than 80% of the fluid temperature. In most cases, it sounds as though this 20% drop in temp may be very beneficial for you. Now take a close look at 301.3.2(b): ...unless a lower average... tempeature is determined by test or heat transfer calculation... so if you have similar ductwork in service, and you go out on a hot summer day and measure the temperature of the bolting and add some margin to it (unless you pick a record hot day to do your measurements) then you can set the design temperature of the bolts based on the measured values of your "test" ductwork flange bolts.
B31.1 has a similar, though more restrictive, approach in 101.3.2(A).
jt