Apparently there is some confusion about Arrangements and what shows up on your Drawing.
To start with, irrespective of which Arrangement you may be looking at in the Assembly, when you make a Drawing of that Assembly using the Master Model mode (particularly when using Drawing templates), the Drawing will show the 'Default' Arrangement. Also note that this will be the Arrangement that is used to compute the Parts List.
Now once you have a Drawing created (and I'm talking about the original 'Base View' and any projected views you may created relative to that original Base View) you can edit which Arrangement is being shown using the Assembly Navigator and both the Drawing views and the Parts List will update correctly and this situation will NOT change even if the new Arrangement is still NOT been set as the 'Default' Arrangement back in the Master Assembly Model. Once created, the drawing will retain what it it you wanted even if you change Arrangements later.
Now for any secondary views added. Once you have the original 'Base View' on your drawing and you decide that you would like to add some secondary views showing perhaps the alternative Arrangements, you add another Base View but you MUST at time decide which Arrangement that you wish to see since once placed, you can NOT edit the Arrangement shown in this secondary view, therefore this is when you use the option of defining the Arrangement as you are adding the view. Note that you can add as many secondary views by reusing the Add Base View function, which will allow you to select a unique Arrangement for each new secondary view.
Anyway, I hope this clears things up a bit.
John R. Baker, P.E.
Product 'Evangelist'
Product Design Solutions
Siemens PLM Software Inc.
Industry Sector
Cypress, CA
To an Engineer, the glass is twice as big as it needs to be.