We have an experience on 5000kVA 11kV alternator- While meggering (2.5kV) the stator, its AVR card damaged. However AVR power supply is coming from auxiliary winding (additional winding on stator) of the alternator. High step voltage (while MEGGERING ) might induce in aux. winding and damaged the AVR card.
After isolating AVR card during meggering, no more damages recorded .