Given that eccentric shear on the connection results in shears that might not be perpendicular to the slot I would think using anything but std. holes in conjunction with these tables might not be a good idea.
But, pg 7-18 in the Black Book references slip critical as a limit state which implies that the tables can be used for Short Slotted holes using the appropriate Rn value in the equation.
After all, the table is really just based on the geometry of the connection.