in solidwork you can work with the side sketch of the hole and move the lenght to the tip, this is what I was searching for.
I guess it all depends on how you want to define the holes. Here is what I would do, given your situation:
1) First off, I would define the holes by a plane normal to the surface, and plunge them. I would not use a side sketch.
2) For all holes of a given size, define the diameter of the hole with a parameter. (flat bottom hole)
3) create a chamfer on the bottom of the hole equal to 1/2 the diameter.
4) create a formula for each chamfer, and set the formula equal to the radius of the hole. (radius is how holes are defined by formula - not diameter) It would be a good idea to group hole diameters and chamfers logically, so that you don't have to chamfer each hole individually. (although, admittedly, this will make a size change more difficult)
5) For easy measurement, you can put a point in the center of each hole, and make a normal line to it. (to define the centerline) Create a formula which states that the length of the line is equal to the depth of the hole. The chamfer is just cosmetic at this point, so you will get the true depth.
The advantage to this, is that no matter what the depth, you will always have a quick and easy point of reference. You can even attach measures, and leave them in the model, if it helps you out. I do this quite often.
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