OG, I just remembered that higher factors of safety may be considered due to the issues you mentioned above. If you look at Das book, while typical FOS of 3 for foundation design is used, a FOS of 5 is recommended for the unconfined compressive strength of the rock. Also, although it depends on the exerted loads in the foundation , I do not give very high bearing capacities for rock. I just tried to check for the common value used in my area, despite the values I get from the calculations (which normally are very high). For example, if you have a small loaded structure and you give high allowable bearing capacities, foundations may be too small and unstable. Of course, the structural engineer will check this and may use a size of footings corresponding to lower allowable bearing pressures than the ones you have provided.