32c4,
If you replace an existing fan with a new, bigger one, I would expect different performance. Is the new expected to run at the same speed as the old one? I would expect the bigger fan use use more motor power. I would expect it to move more air, but is this air hitting your motor? If it isn't, I would expect increased temperature.
If you modify your cooling system and the temperature goes up, your modification does not work.
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JHG