BillHolt's solution for the specific condition with the lower end the pipe full is correct. If you plug Depth = twice Radius (D = 2R) and then (y = 2R - R) or (y = R) into the formula, for the lower end full condition, you end up with the simplified formula
PI*(R^2)*(R/S) or (1/2)*PI*(R^2)*(D/S)
where depth divided by slope is the length, which is the same as BillHolt's solution
The full formula should give a solution for situations where the pipe is not full at he lower end; i.e. Depth at the lower end of the pipe is less than the diameter of the pipe. Note that depth should be measured normal to the flowline of the circular pipe for the formula to work properly, if depth is measured on a plumb line then a slight error is introduced due to the slope of the pipe, but the error is going to be negligible for most practical purposes at slopes less than 10%.