CoreyGuo,
Answering in order,
1 I suggested using specialist FEM analysis programs which at least allow you to model grillages of beams properly. Some of these can also model creep but not cracking and creep and shrinkage effects for deflections. At least the stiffness models from these programs will be more correct than you will get from the design FEM programs that only have plate/shell elements (again unless they have added more recently that I do not know about). Agreed you will not get the effects of cracking or long term effects. But, after doing the design, you could rerun the analysis with reduced stiffness on these members to try to match the total long term deflection from the design if you want to check the variation on the reactions from the long term effects.
2 No, I would use a T beam with the effective flange width but I would assume the full PT from the beam tendons is contained within that width.
3 It depends on the load condition and the age of the concrete. At the time of stressing with basically no shrinkage and balanced load similar to the dead load, yes the axial prestress will dissipate over the full width. If you are doing partial prestress design, then at the supports the prestress will be in the web under service loads and at ultimate so no dissipation after the flange cracks. At midspan, it will dissipate over the effective flange width under all of these situations. Under long term effects, over the full length there would be little or no dissipation to the slabs.
As per 2, I assume dissipation over the width of the effectiove flange, no further. I and many others have used this approach over the last 33 years in my experience and before my time also. This is the standard approach used for design in most parts of the world for PT members. Some PT programs that assume dissipation over the full width only do so for the service stresses. Ultimate strength logic is putting the full prestress force in the effective flange anyway.
Some people suggest that FEM proves the full dissipation but as I mentioned in earlier posts, this would only apply if concrete were an elastic homogeneous material. It is not, it cracks, creeps and shrinks and these properties vary with concrete shape.
With the size of beams you are going to need for this project, I would expect no dissipation past the effective flange.
4 RAPT allows for cracking and does a creep and shrinkage analysis for deflection calculations allowing for concrete properties, reinforcement and prestress and short term and permanent load conditions. Similar to the method prescribed in Part 2 of BS8110. All of its section calculations are by strain compatibility (except for unbonded PT tendons) and allow for variable concrete properties as well as cracking and normal stress/strain relationships for concrete and steel (no rectangular stress blocks for concrete).
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