Hi nick24,
What is "self aligning" ?
What is the pump OEM's recommendation for leveling? If they condone leveling nuts on the anchor bolts below the pump base be very afraid. Take measures to protect yourself.
When the OEM's fantasy land base design fails to perform during vibration acceptance tests You will be the one who looks bad, and will be expected to "fix" it for free.
Got some pictures of your pump bases from above and below, showing their construction and (I hope) welded reinforcement on the undersides, especially in the regions around the pump mounting bolts and leading to the anchor bolt locations?
Is the pump mounting surface machined flat? Is the pump base rolled from steel plate?
How thick?
Does the pump manufacturer offer a premium engineered base designed with a top plate at least 1/2" thick and strategically placed welded structural steel ribs to support the pump properly without relying on (you) filling it with magic grout?
There are some pump bases whose designs are 100% wishful thinking.
Expecting cementitious grout to "stick" to the underside of a steel plate is in my opinion beyond wishful thinking.
I believe you will find The intructions for epoxy grout detail surface prep similar to a real epoxy joint. Grit blasted to bare steel in "white" condition and degreased just prior to grouting.
Even then the expectation of a 100% void-free grout fill is asking A LOT.
.
Getting rid of those leveling nuts is the first step