Every time the elevator is filled, dust accumulates on top of every surface (pipes, ledges, etc.), and if something disturbs the dust, for instance a sudden vibration like a small, initial explosion near the grain handling area, the collected dust shakes loose and mixes quickly with enough air to make a larger explosion. You will not eliminate the fuel where grain is actively being handled, so keeping the risk of ignition low is the primary control. To prevent a secondary explosion, housekeeping is most important.
On a smaller scale in a past career, I designed high speed explosion detection-suppression systems using UV/IR detectors and high speed water as well as CO2 suppression. The challenge with this size of a vessel is the rapid detection-suppression sequence required over a very large area. Some grain silo facilities will be a quarter to half mile long, and then each silo is quite tall. Water cannot be used effectively since the silo will not be maintained above freezing temperature as all times. Halon is not an option - very expensive (if you can get it, hundreds of thousand of dollars per silo and deadly once you get the discharge required for an empty silo into a partially filled one.) There is probably a suppression system one could design, but prevention is far less expensive, however that requires the rather undependable human element.