Short answer: no.
Longer answer: it is not calculable with any great reliability. We have modelling packages (VSIGN) that do model discrete damping elements and can combine FE results into a non linear model to give estimates of the overall system response.
If you are looking at fairly simple structures then a test for the damping of the materials may help.
The other option is to get an experimental modal analysis of a similar system and use the damping values extracted from that for your modes. This is what we do typically.
Damping coefficients for say a steel crankshaft can be as low as .001, altough .01-.02 is more typical. For cast iron blocks with a few bolted joints maybe use .05
If you do a modal on an entire vehicle then the damping can be as high as .1, even if the shock absorbers etc have been removed. We'd tend to ignore any modes with damping higher than that as our estimates of their parameters would be so poor.
There is some literature on this - the machine tool design people are keen to improve their understanding of the tool/part interface, which is obviously heavily non-linear, but I don't have any paper numbers. The papers I see about this are usually from the International Modal Analysis Conference, but I have no contact info for them.
Cheers
Greg Locock