I think you are going to face bigger challenges than the CT. What level of attenuation are you looking at with the 51st harmonic? In other words, will you have enough signal to measure with your equipment? Will interference from other sources like you power supply be problematic? I assume you are planning on using an FFT for this, do you have a sufficient number of clean samples to get sufficient bin resolution? Things like that become real problems in physical applications that aren't apparent in simulations.