Percentages vary according to the project requirements and competitive business climate. For example a typical petrochemical facility would be on the order of 18% of the capital cost ( or Total Direct Cost), this would translate into 12% of the bottom line (Direct plus Indirect).
Don't forget that in addition to the cost items you noted - I would call them Home Office Engineering and Construction Management respectively - you'll also have Sales Tax, Freight, Contingency, (perhaps) Owners Costs, Fee, and Contractors General Liability Insurance (CGL). This is only a partial list.