Tension tests on battered piles are okay and are fequently done for minipiles. Compression tests really should not be done on batter piles for a number of reasons, but to answer your question, I would think the test should be prefomed axially.I have been asked to do this and have gotten the engineer to agree to testing a plumb pile instead. Problems with compression batter pile testing are: assume you are testing to 50 tons, the reaction frame should be approximately 125 tons. Very hard to provide that reaction at a batter. Now you have the jack. In a plumb load test, the weight vector is concentric with the test load vector. Now it is at an angle, trying to move the jack out of line. Once the jack slips, the data from the test is ruined. (not to mention that I would not want to be too close at that moment) Then there is the problem of bearing plates and load plates - how do you hold everything while you pu a seating load?, instumentation, etc. You will end up spending at least 25% more for this test and the data may not tell you anything in the end.
Tell the SE that auger cast vs pipe is the pile type, and that plumb vs.battered is not a different pile type, but a different orientation. Doing a plumb test will give you all the data you need to evaluate the battered piles.
I would tell him if he stays out of your piles, you won't offer your comments on his connection details.